- Remote sensing of cytotype and its consequences for canopy damage in quaking aspen. You can tell diploid from triploid trees from space.
- Future global conflict risk hotspots between biodiversity conservation and food security: 10 countries and 7 Biodiversity Hotspots. Fancy maths tells us biodiversity and agriculture are most in conflict in DRC, Sierra Leone, Malawi, Togo, Zambia, Angola, Guinea, Nigeria, Laos, and Cambodia.
- Allele mining in diverse accessions of tropical grasses to improve forage quality and reduce environmental impact. A draft reference genome from a single species tells us about 7 potentially useful alleles among 104 clearly very well chosen accessions of Urochloa spp and Megathyrsus maximus.
- Research Status of Forage Seed Industry in China. I wonder how many of the above alleles can be found in the Chinese forage collection. Might be easier to eventually find out if the website supposedly serving up the national forage germplasm resource management system actually worked.
- Safe conservation and utilization of peanut germplasm resources in the Oil Crops Middle-term Genebank of China. We are even told about some individual interesting accessions, though not how to get hold of them.
- The impact of crop diversification, tillage and fertilization type on soil total microbial, fungal and bacterial abundance: A worldwide meta-analysis of agricultural sites. Meta-analysis tells us that use of organic fertilisers and reduced tillage are associated with more microbes, fungi and bacteria in the soil.
- Detecting the linkage between arable land use and poverty using machine learning methods at global perspective. Machines tells us that higher crop yields and more fertilisers are associated with lower poverty levels. Non-machines are shocked. No word on soil microbial abundance.
- The 10 Elements of Agroecology: enabling transitions towards sustainable agriculture and food systems through visual narratives. Well, these 10 are not only the elements of agroecology, so they could tell us about other messaging too.
- Regional Patterns of Late Medieval and Early Modern European Building Activity Revealed by Felling Dates. Tree rings in old buildings tells us more felling where and when grain prices were low and mining activity high. No machines involed.
- Genetic diversity analysis and characterization of Ugandan sorghum. A tropical genebank collection can tell us about temperate-adapted germplasm, if we know how to ask.
- Discovery and characterization of sweetpotato’s closest tetraploid relative. Meet Ipomoea aequatoriensis T. Wells & P. Muñoz sp. nov. from, well, Ecuador.
- Metabolomic selection for enhanced fruit flavor. Another machine tells us how to pick tasty tomatoes and blueberries from chemical profiles. No word on when it will be able to describe new species.
Brainfood: CGIAR, Wheat adoption, Durum erosion, Napier grass diversity, Asian trees, Cannabis origins, Potato genome, Somaclonal variation, Sugarcane collections, On farm beans, Crowd-sourced diets, Banana mapping, Medicinal enset, Vitis diversity
- Viewpoint: Aligning vision and reality in publicly funded agricultural research for development: A case study of CGIAR. Some countries and crops are being short-changed.
- Institutional and farm-level challenges limiting the diffusion of new varieties from public and CGIAR centers: The case of wheat in Morocco. No way either Morocco nor wheat are being short-changed, and yet both micro-level and institutional factors are holding back new varieties there.
- Estimation of genetic erosion on Ethiopian tetraploid wheat landraces using different approaches. No such adoption problems in Ethiopia, it seems.
- Insights Into the Genetic Architecture of Complex Traits in Napier Grass (Cenchrus purpureus) and QTL Regions Governing Forage Biomass Yield, Water Use Efficiency and Feed Quality Traits. Napier grass is clearly not being short-changed. I’m sure my MIL would approve.
- Tropical and subtropical Asia’s valued tree species under threat. Not valued enough, though.
- The origin of the genus Cannabis. If CGIAR decides to work on cannabis, Yunnan would be the place to start getting material from.
- Phased, chromosome-scale genome assemblies of tetraploid potato reveals a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity. Clonal propagation and limited meiosis has really short-changed the potato, but this work, which includes CGIAR, will really help breeders get rid of accumulated nasty alleles.
- Somaclonal variation in clonal crops: containing the bad, exploring the good. And then there’s somaclonal variation…
- Sugarcane Genetic Diversity and Major Germplasm Collections. Ripe for the above treatment. Followed by take-over by CGIAR.
- On-farm conservation in Phaseolus lunatus L: an alternative for agricultural biodiversity. On farm conservation must not be short-changed.
- Leveraging Digital Tools and Crowdsourcing Approaches to Generate High-Frequency Data for Diet Quality Monitoring at Population Scale in Rwanda. Younger people get short-changed in their diet; but, surprisingly, women do not.
- UAV-Based Mapping of Banana Land Area for Village-Level Decision-Support in Rwanda. Can’t help thinking we’re being short-changed by not mashing this up with the above somehow.
- The Genetic Diversity of Enset (Ensete ventricosum) Landraces Used in Traditional Medicine Is Similar to the Diversity Found in Non-medicinal Landraces. The title short-changes the casual reader. Medicinal varieties are in fact different from non-medicinal varieties, but do not cluster together. Mapping from space next?
- Phenological diversity in wild and hybrid grapes (Vitis) from the USDA-ARS cold-hardy grape collection. No sign of short-changing grapevine, at least in the US, resulting in some interesting opportunities for its expansion into new areas using wild relatives.
Brainfood: Chickpea genomes, DIIVA, Maize evolution, Malting barley, Wild gluten, Cucurbit review, Coconut genome double, USDA rice collection, CIAT bean collection, PGRFA data integration, USA cattle diversity, PGRFA history
- A chickpea genetic variation map based on the sequencing of 3,366 genomes. Where the good and the bad alleles are. Even The Economist is impressed.
- Crop Wild Relatives Crosses: Multi-Location Assessment in Durum Wheat, Barley, and Lentil. There are lots of good alleles in the wild relatives.
- The arches and spandrels of maize domestication, adaptation, and improvement. Some alleles are good by accident, and that’s ok.
- Malting Quality of ICARDA Elite Winter Barley (Hordeum vulgare L.) Germplasm Grown in Moroccan Middle Atlas. Here are some alleles for good beer.
- High molecular weight glutenin gene diversity in Aegilops tauschii demonstrates unique origin of superior wheat quality. And here are some alleles for good gluten. In a wild relative from unexpected place, as it turns out. More in the press release.
- Genetic resources of bottle gourd (Lagenaria siceraria (Molina) Standl.] and citron watermelon (Citrullus lanatus var. citroides (L.H. Bailey) Mansf. ex Greb.): implications for genetic improvement, product development and commercialization: a review. Not just good as rootstocks, and lots of alleles to play with.
- Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance. Looks like coconut might have lost a lot of good alleles at the end of the Pleistocene glaciations.
- High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height. The same gene controls height in coconuts as in maize and rice.
- Enhancing the searchability, breeding utility, and efficient management of germplasm accessions in the USDA−ARS rice collection. And now you can look for rice germplasm with the good height allele you want.
- History and impact of a bean (Phaseolus spp., Leguminosae, Phaseoleae) collection. Hopefully will be able to do the same for this bean collection soon.
- Integrating Genomic and Phenomic Approaches to Support Plant Genetic Resources Conservation and Use. The above, summarized.
- Gene Bank Collection Strategies Based Upon Geographic and Environmental Indicators for Beef Breeds in the United States of America. The above, plus environmental data, for cattle.
- History of Global Germplasm Conservation System. The above, writ large.
Brainfood: Coconut cloning, Apricot diversity, European ag double, Diet seasonality, Farm size, Ethiopian seeds, Biocultural diversity, Aquatic food, Grasslands, Pollinator mixtures
- Development of the first axillary in vitro shoot multiplication protocol for coconut palms. Cloning the tree of life, really fast.
- Frequent germplasm exchanges drive the high genetic diversity of Chinese-cultivated common apricot germplasm. Looking forward to the same being said about coconut.
- Crop diversity effects on temporal agricultural production stability across European regions. The effects are good.
- Are agricultural sustainability and resilience complementary notions? Evidence from the North European agriculture. They are indeed, but what about stability though?
- Seasonal variability of women’s dietary diversity and food provisioning: a cohort study in rural Burkina Faso. Do Europe now.
- The “Sweet Spot” in the Middle: Why Do Mid-Scale Farms Adopt Diversification Practices at Higher Rates? Spoiler alert: it’s got less to do with farm size than with access to resources and markets. At least for Californian lettuce farmers.
- Politics of seeds in Ethiopia’s agricultural transformation: pathways to seed system development. The Ethiopian seed system needs diversification just as much as Californian lettuce farmers.
- Biocultural Diversity for Food System Transformation Under Global Environmental Change. What we all need is biocultural diversity.
- Harnessing the diversity of small-scale actors is key to the future of aquatic food systems. Yes, all of us, whether in mountains or by the sea.
- Combatting global grassland degradation. It may be stretching a point, but biocultural diversity may also be a useful lens through which to look at grassland restoration and sustainable management. But then I would say that.
- Supporting wild pollinators in agricultural landscapes through targeted legume mixtures. Yeah, let’s not forget the pollinators while we’re at it.
Nibbles: Pasta al forno, Polynesian dispersal, Ryan Phelan talk
- More evidence that some food staples are going to be in trouble.
- Samoa to Rapa Nui in 400 years. But the Americas before that? Mash up with banana, taro and sweet potato next.
- TED talk on genetic rescue.