- Is local biodiversity declining or not? A summary of the debate over analysis of species richness time trends. Better data needed.
- How endogenous plant pararetroviruses shed light on Musa evolution. Some banana plants have B genomes which are non-infective for potentially nasty viral integrants, making them good parents in breeding programmes.
- Late Holocene forest contraction and fragmentation in central Africa. From one horse’s mouth: “…this fragmentation 2500 years ago allowed the migration of the Bantu through the forests, who were able to exploit pioneering trees, such as energy rich oil palms which had colonized the gaps created, as well as being able to cultivate for the first times cereals in this newly created agricultural zone, notably pearl millet.”
- Cryobiotechnology of apple (Malus spp.): development, progress and future prospects. “…one of the most extensively studied plant genera with respect to cryopreservation.”
- Sustaining the Future of Plant Breeding: The Critical Role of the USDA-ARS National Plant Germplasm System. The next level: gap filling, more phenotyping and genotyping, better info systems, more pre-breeding, improved training for using PGR in breeding programs, expanded outreach. Could say the same about the rest of the world too.
- Role of Viral Diagnostics in Quarantine for Plant Genetic Resources and Preparedness. Calls for India to put in place a “National Plant Pests Diagnostic and Certification Network.” Maybe should be added to above.
- Threatened Goat Breeds from the Tropics: The Impact of Crossbreeding with Foreign Goats. You need to be careful with it, Brazilians say.
- Importance of native animal genetic resources. Turks too.
- Editorial: Harvesting plant and microbial biodiversity for sustainably enhanced food security. A whole Research Topic, no less. No animals though…
- Genotypic variability enhances the reproducibility of an ecological study. Because it buffers the effects of “environmental” differences in laboratory studies.
- Unlocking new alleles for leaf rust resistance in the Vavilov wheat collection. 13 new loci, maybe.
- Leaf Doctor: A New Portable Application for Quantifying Plant Disease Severity. Something to test the above with.
- Household Determinants of the Adoption of Improved Cassava Varieties using DNA Fingerprinting to Identify Varieties in Farmer Fields: A Case Study in Colombia. 434 samples from 217 farmers reveals 120 varieties, 9 of which were improved; farmers overestimate their use of new varieties, but in general those with more dependents, more land, and more access to extension have more improved varieties.
Back to the future for the forests of Central Africa
Two of the authors, Jean Maley and Alex Chepstow-Lusty, summarize a recent paper in Quaternary Research for us.
A recent article in Quaternary Research ((Maley, J., Doumenge, C., Giresse, P., Mahé, G., Philippon, N., Hubau, W., Lokonda, M., Tshibamba, J., Chepstow-Lusty, A. (2017). Late Holocene forest contraction and fragmentation in central Africa. Quaternary Research, 1-17. doi:10.1017/qua.2017.97)) by Jean Maley at the University of Montpellier and colleagues, which focuses on the scale of natural contraction and fragmentation of the rainforests across Central Africa 2500-2000 years ago, may have major implications for agriculture in this vulnerable region today. During this period, linked to global climate change, dry seasons became longer, and, combined with intensified storm activity, resulted in widespread erosion.
It has been proposed that this fragmentation 2500 years ago allowed the second and major phase of migration of Bantu-speaking peoples through the forests ((Bostoen, K., Clist, B., Doumenge, C., Grollemund, R., Hombert, J.M, Muluwa, J.K., Maley, J. 2015. Middle to Late Holocene paleoclimatic change and early Bantu expansion in the rain forests of Western Central Africa. Current Anthropology, 56 (3) : 354-384.)), who were able to exploit pioneering trees, such as energy rich oil palms that had colonized the gaps created, as well as cultivate for the first time cereals in this newly created agricultural zone, including pearl millet (Pennisetum glaucum), for which archaeological evidence has been found.
This map in the paper indicates the extent of the forest refuges 2500 years ago, which were more resilient to climate change and hopefully shall remain so. The longer dry season, between 2500-2000 years ago, eliminated previous rainforests, and provided space for pioneer forests and savanna. Subsequently, after 2000 years ago, the rainforests grew back. In some regions, from south-eastern Cameroon to the northeast and east of the Congo Basin, a new forest formation developed, characterized by Gilbertiodendron dewevrei (‘Limbali’), a shade tolerant tree belonging to the Fabaceae-Caesalpinioideae. This canopy tree forms very dense, practically monospecific, evergreen stands in which the species regenerates well under its own shade. Nevertheless, some fragments of savanna have survived to this day as islands within the rainforest.

Recent meteorological data, including increased thunder and lightning activity, may already be suggesting that the climatic patterns leading to forest contraction and major erosion are starting again. Hence, the interval 2500-2000 years ago could provide a model for the future, with the savannas re-expanding (i.e. especially in the areas outside of the forest refuges). Previously, this occurred when human populations were negligible. That’s not the case now.
If predictions of an extended dry season become a reality, agriculturally a greater emphasis should probably be placed on the cultivation of African native cereals ((National Research Council. 1996. Lost Crops of Africa. Volume 1: Grains. National Academy Press. Washington D.C.)), which maintain the characteristics of their wild savanna ancestors. Besides pearl millet, these include sorghum (Sorghum bicolor), finger millet (Eleusine coracana), fonio (Digitalis exilis and D. iburua) and African rice (Oryza glaberrima), and there should be less dependence on the relatively recent introductions and more demanding global cereals: wheat, rice and maize. Indeed, this approach could be essential for maintaining the production of arable lands in much of Central Africa and providing food security for an ever-growing population.
This paper brings together a range of data across a wide-geographical area, and should act as a wake-up call, with the implications for climate change, human activities and conservation already being experienced.
Nibbles: Pine nuts, Indian rice, Chai, Amazonian encyclopedia, Sustainable markets, First cryo, Wild apples, Scurvy
- Mongolians nuts for pine nuts.
- Indians increasingly nuts for heirloom rices.
- Tea: a tale of two words.
- Wait, Mongabay does podcasts now?
- DfID backs sustainable supply chains. But is diversity considered?
- The origins of cryo.
- Student saves apple. Species, that is.
- Scurvy was not all bad? Who needs fruit.
Nibbles: Irradiated mangoes, PNG genebank, Chinese taro, Strawberry breeding, DNA sequencing, Googling sheep, Weird pineapple, Agroforestry, Olive diversity, Xylella, Fermentation, Pulque & mezcal, Cheese & donkeys, Italian food double, Tomato double, Fairchild, Vanilla history, Potato history, Kelemu
- Did you miss us? Well, we’re making up for lost time today. Buckle up.
- Seafaring mangoes.
- India to help PNG get (another?) genebank.
- Somebody mention taro? The Chinese are coming.
- Strawberries for Christmas.
- Handheld genotyping. Brave new world.
- All the sheep in the world.
- Trees > lungs.
- Pink pineapple. Yeah, why not.
- Tuscan olives are Etruscan.
- Wonder if they’ll survive.
- Fermentation never went away.
- Case in point #1: pulque.
- Which is a cousin of mezcal.
- Case in point #2: cheese.
- Of which this is the most expensive, apparently.
- 2018 is the year of italian food, according to italians.
- Maybe they’ll use this infographic to advertize it.
- The transatlantic history of a mainstay of italian cooking, the tomato.
- Which looks really diverse in the Canaries too.
- “Food spy” is a bit harsh on Fairchild.
- Wonder if he ever collected vanilla.
- Or potatoes.
- Hero is about right for Segenet.
Brainfood: Wheat exudates, Conservation threats, Resilience, Dietary recommendations, Urban green spaces, Dog spread, Wild foods, Ethnic fish, Brazilian cattle, Nocturnal fixation, Agroforestry impacts
- Evolution of the crop rhizosphere: impact of domestication on root exudates in tetraploid wheat (Triticum turgidum L.). Domestication and breeding have led to (probably adaptive) changes in root exudates.
- Threats from urban expansion, agricultural transformation and forest loss on global conservation priority areas. Vertebrate Biodiversity Hotspots are most threatened by all three factors. Plants too?
- Patterns and drivers of biodiversity–stability relationships under climate extremes. Species richness may not be enough to buffer ecosystems from extreme precipitations events. But a different metric would give a different result?
- Evaluating the environmental impacts of dietary recommendations. Adopting nationally recommended diets would help the environment.
- On the Use of Hedonic Price Indices to Understand Ecosystem Service Provision from Urban Green Space in Five Latin American Megacities. There’s an overall strong positive correlation between urban greenery and house prices, but it’s context-specific.
- Disease: A Hitherto Unexplored Constraint on the Spread of Dogs (Canis lupus familiaris) in Pre-Columbian South America. Yes, why are there no dogs in the Amazon?
- Children and Wild Foods in the Context of Deforestation in Rural Malawi. Fewer wild foods in more deforested sites, and fewer sold by children from better-off households. What of the nutrition outcomes, though?
- Biodiversity defrosted: unveiling non-compliant fish trade in ethnic food stores. About 40% of samples in Liverpool and Manchester mislabelled.
- Population viability analysis of the Crioula Lageano cattle. It’s going to be fine.
- The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism. Next stop, CAM rice.
- Contribution of trees to the conservation of biodiversity and ecosystem services in agricultural landscapes. It depends. But what would those kids in Malawi say?