Thai rice on the genebank menu

158826661 3Cb29Defdd M There was a slightly odd article at Seed Magazine a little while back on Thailand’s efforts to conserve almost extinct varieties of rice in its genebank. Odd because while the story is familiar enough in this kind of piece, the details are slightly confused (or confusing). But no matter, that’s probably only of concern to a pedant like me. The rest of you won’t worry about statements like “farmers across Asia once grew more than 100 varieties of rice, but now that number is down to only 20 or 30 of the most productive types”. Instead, you’ll be thrilled to know that the Thai national collection houses nearly 24,000 varieties, 17,000 of which “are in danger of dying out because they are no longer grown by Thai farmers”. That’s great because SINGER, a window on the world of genebank accessions, lists only 5982 samples from Thailand. Maybe one of those is “the fragrant Pin Kaew variety that was named the best rice in the world at a competition in 1966 but which has since disappeared, having lost out to more productive varieties”.

flickr photo by Stef Noble used under a Creative Commons license. Purple Sticky Rice is rare, but not that rare.

Crop wild relatives underused

Are crop wild relatives (CWR) more trouble than they’re worth? There are certainly significant challenges involved in including them in breeding programmes, but you’d have thought that between the new molecular tools that are now out there, the greater numbers of CWR accessions in genebanks, and all the information about how useful CWRs can be, breeders would be falling over themselves to make those kinky inter-specific crosses. Well, according to a major review by our friends at Bioversity International (the outfit formerly known as the International Plant Genetic Resources Institute), the use of CWRs in breeding programmes has been steadily increasing in the past 20 years, but probably not as much as might have been expected. There’s been a number of papers recently on CWRs. This paper, also from Bioversity, looks at in situ conservation of CWR. Check out this for a discussion on the definition of the term, and, from some of the same people, there’s this overview of conservation and use of CWR, using a specific example. Here’s an example of conservation assessment and priority-setting for the wild relatives of the peanut. For a discussion of the possible effects of climate change on these species, see this.

Using biodiversity collections

Researchers have estimated rates of reproduction and survival for the marbled murrelet by “comparing the ratios of birds in different age groups using 170 specimens collected between 1892 and 1922 housed in the collections of the California Academy of Sciences and the UC Berkeley Museum of Vertebrate Zoology … with values predicted from comparison with other bird species, and with contemporary rates obtained from murrelets they captured at sea and from their mark-recapture studies.” The results suggested that birth rates were almost 10 times higher for this endangered seabird 100 years ago than they are today. Read all about it here. That’s a very creative use of a biodiversity collection to explain the recent decline in numbers of this species, and its conservation status. Has something similar been done with herbarium and/or plant genebank collections? I can’t think of any examples, but they must be out there…

Core blimey!

I spent the last few days in Portesham, Dorset (thanks, Lorna and Geoff!), which made it all the more weird to come across this article reprinted in a newspaper in Dubai, where I had to transit for a few hours on the way out there. But it does show that you can still discover (or re-discover) new things even in such a well-researched crop as apples in the UK. Of course, for every upbeat story, there’s a depressing one.

Brazil and US work on exchange of genetic resources

Brazilian and US scientists are working together on basic research into germplasm storage, according to an article from the US Department of Agriculture (USDA). The research is part of a scientific collaboration between Brazil’s EMBRAPA and the US Agricultural Research Service which has been in place since 1998. Genebank management is a relatively recent topic for the collaboration, which is extending to animal genetic resources. A Brazilian programmer is working with ARS to develop the animal genetic resources component of GRIN.

The two groups of scientists are also working on the physical exchange of material between their two countries. Let’s hope they’ve got their access and benefit sharing details all worked out.