CABI suggests global database of plant health

CABI will create a comprehensive global database of plant health, underpinned by CABI’s ever-growing collection of the world’s most extensive and trusted agricultural content. This currently comprises eight million records in CAB Abstracts, 30,000 pest datasheets from the Crop Protection Compendium, thousands of images, and almost 2,000 distribution maps. These will be augmented with research project findings, book content, sanitary and phytosanitary legislative standards, and open access data from authoritative partners. These include the UN’s Food and Agriculture Organization, the International Plant Protection Convention, and various national plant protection organizations.

A great starting point for the assessment of future breeding needs as well genetic erosion threats? Attentive readers will remember we’ve blogged about CABI’s pest/disease distribution maps before.

Nibbles: Asses, Mapping pathogens, Oysters, Tea, Turkish biodiversity hotspot, Dolmades and sage, Yams festival, Pollen video, Agriculture and mitigation, Rarity, School feeding, Sheep

Mining the internet for threats to agrobiodiversity

Late last year I blogged about what an early warning system for erosion of agricultural diversity might look like. I was thinking of an active reporting system, but today Conservation Maven reminds me of a paper published a few months ago that suggests that a more passive approach might also be possible. The authors ask the question: Can researchers who are interested in ecological monitoring tap into … increased flows of information by “mining” the internet to detect “early-warning” signs that may signal abrupt ecological changes? The paper is behind a paywall, but I’ve ordered it. Once I read it, I’ll report back whether web crawlers have a future in genetic erosion monitoring.

Reviewing the use and usefulness of cereal landraces

From Eliseu Bettencourt, one of the authors of the paper concerned.

The paper “Cereal landraces for sustainable agriculture. A review” was recently made available on-line at Agronomy for Sustainable Development, though behind a paywall. The paper version will be published soon.

The paper is co-authored by eighteen authors pulling together diverse backgrounds and expertises.

The review addresses the current status and prospects for cereals landraces in the context of sustainable agriculture, discussing the place of landraces in the origin of modern cereal crops and breeding of elite cereal cultivars, the importance of on-farm and ex situ diversity conservation; how modern genotyping approaches can help both conservation and exploitation; the importance of different phenotyping approaches; and whether legal issues associated with landrace marketing and utilisation need addressing.

The paper also deals with the current status and potential for the improved deployment and exploitation of landraces, and incorporation of their positive qualities into new cultivars or populations for more sustainable agricultural production. In particular, their potential as sources of novel disease and abiotic stress resistance genes or combination of genes if deployed appropriately, of phytonutrients accompanied with optimal micronutrient concentrations which can help alleviate aging-related and chronic diseases, and of nutrient use efficiency traits.

The paper is structured in 12 chapters, namely: Introduction; History of cereal landraces; Diversity and germplasm collections; Genebanks and conservation of cereal landraces; Genotyping and phenotyping; Nutrient uptake and utilisation; Nutrition and quality; Biotic and abiotic stress resistance and tolerance; Breeding: conversion of landraces into modern cultivars; Participatory breeding; Legal issues; Conclusions. The paper also counts with an extensive list of bibliographic sources.

The main findings of the paper can be summarised as: A lot of recent research effort has gone into collecting, organising, studying and analysing cereal landraces with a primary goal being to incorporate their positive qualities in new cultivars or populations for a more sustainable agricultural production, particularly in response to recent climate changes.

A major part of this valuable landrace diversity is conserved in the world’s genebanks network and should be exploited systematically for traits such as quality and specific adaptations to stress environments. However, the available genetic variation in adaptive responses to soil and climatic conditions conserved in landraces is little understood, and even less used. More uniform and user-friendly documentation about collection and characterisation of landraces, either morphologically or with molecular tools, is needed to access this variation more effectively. Genebanks should aim at adopting a common concept of landraces and plan special inventories for them. The level of diversity should be monitored during their conservation so that the original level of variation is maintained. More studies are needed in order to investigate if their long-term maintenance by farmers resulted in increasing genetic variation.

New high-throughput genotyping platforms and phenotyping data in common databases will enable powerful association genetic approaches to be used for improvement and direct deployment of landrace resources.

The renewed focus on cereal landraces for breeding purposes is also a response to some negative consequences of modern agriculture and conventional breeding, such as the liberal use of high inputs, the loss of genetic diversity and the stagnation of yields in less favourable areas.

Further enhancement of productivity and stability is achieved through practicing “non-stop selection” within landraces across the marginal production environments, to exploit the constantly released by the genome useful adaptive variation.

The review highlights the value of landraces as resources for the future sustainability of cereal crop production, the methods to enhance their genetic makeup and avoid seed degradation and emphasises the level of co-ordination and resourcing needed to realise the great potential of cereal landraces.

Patenting systems good for vegetable diversity

Here’s a turn-up for the books. Our friends at the CAS-IP blog link to a couple of papers that examine the influence of intellectual property rights on vegetable diversity. I’m going to come right out and admit that I haven’t read the papers. But like CAS-IP, I’m intrigued by this quote:

More than 16% of all vegetable varieties that have ever been patented were commercially available in 2004.

Or, to put it another way, less than 84% of all vegetable varieties that have ever been patented were no longer available in 2004.

The primary argument for maintaining crop diversity ((I’m not sure that that would be my primary argument, but let that be.)) is based on the need to maintain a safety net of genetic diversity, to have a broad supply of genes available to breeders who can create more productive, weather-hardy, insect resistant, fungus resistant, and better-tasting crops. … If the meaning of diversity is linked to the survival of ancient varieties, then the lessons of the twentieth century are grim. If it refers instead to the multiplicity of present choices available to breeders, then the story is more hopeful.

The crucial part, of course, is how to measure diversity, and how you interpret it. I deliberately snipped out what I consider the money quote from the passage above. Here it is:

We hope our findings stimulate a discussion about the proper measure for that diversity.

Off you go. Discuss away.