Rethinking the Resurrection Initiative

EurekAlert! had a piece about the Resurrection Initiative a couple of days back:

While an international seed bank in a Norwegian island has been gathering news about its agricultural collection, a group of U.S. scientists has just published an article outlining a different kind of seed bank, one that proposes the gathering of wild species — at intervals in the future — effectively capturing evolution in action.

I guess the idea is worthy enough, but the article is unfortunately full of misconceptions about genebanks. I’ll just highlight the most egregious.

“In contrast to existing seed banks, which exist primarily for conservation, this collection would be for research that would allow a greater understanding of evolution,” said Franks.

Really? That will come as a surprise to all the breeders and other users of genebank materials.

“Typically, seed banks are focused on the preservation of agricultural species or other plant species of strong economic interest, say, forest species, forest trees,” said Mazer. This is to make sure that scientists can maintain a genetically diverse seed pool in the event of some kind of ecological calamity that requires the replenishing of seeds from a certain part of the world or from certain species.

Well, while it is true that most seedbanks concentrate on crops, they do also maintain samples of wild relatives of crops, though probably not nearly enough, and of wild forages. And there are major genebanks — such as the Millennium Genebank at Kew — which conserve only wild species. But it’s the second part of the quote that is perhaps most surprising. Although genebank materials have indeed been used in restoration, surely their most common use is as sources of genes for breeding programmes.

“The approach that we would use is not simply to collect seeds over various time intervals and to archive them, but in the future to raise them in a common environment comparing seeds that were collected in 2010, 2030, and 2050, for example,” said Mazer. “If we found, for example, that the plants that come from seeds that were collected 50 years from now flower much earlier than those that were collected today, we could logically infer that natural selection over 50 years had favored plants, that is genotypes that flowered earlier and earlier, relative to those that delayed flowering.”

That makes it sound as if genebankers never do any characterization and evaluation of their holdings. Raising seeds in a common environment is in fact a standard genebank operation.

Don’t get me wrong, repeated collecting of the same population is an interesting thing to do. We don’t have enough hard data on genetic change. It has in fact been done even for agricultural species, though not on the systematic basis proposed here. I’ve done it myself, revisiting southern Algerian oases from whence wheat had been collected 10 years before, for example. But to suggest that a different kind of genebank is needed to accomodate such an initiative is stretching it. Let’s make sure we are making effective use of the genebanks we already have. We’re having enough difficulty keeping those going on a sustainable basis.

“The maize equivalent of the grey wolf”

Not content with bringing you Our Man Hijmans’ dynamite written dispatches from Harlan II, today, The Spoken Word. David Williams, coordinator of the CGIAR’s System-wide Genetic Resources Programme, appeared on Insight, a daily in-depth interview programme hosted by radio station KXJZ in Sacramento, California. David talked about domestication, genetic modification, the history of collecting, the importance of crop wild relatives and much else besides.

Listen to it here. (About 12 minutes.)

Tasteful breeding

A couple of days ago the Evil Fruit Lord complained — a little bit — about an article in a Ugandan newspaper which extolled the virtues of traditional crops and varieties over new-fangled hybrids. While not doubting the many attractive qualities of landraces and heirloom varieties, he quite rightly pointed out that there’s nothing to stop modern varieties and hybrids tasting just as good:

I get really sick of the tendency to talk about plant breeding as a process which makes crops into finicky, crappy tasting garbage in exchange for yield. You absolutely can create varieties which taste as good (or better) than traditional varieties, produce more, and resist pests. In fact, plant breeding is the only way to get to that.

Now there’s an article by Arthur Allen in Smithsonian magazine which basically says — not very surprisingly, I suppose — that both those things have happened in the tomato:

Flavor … has not been a goal of most breeding programs. While importing traits like disease resistance, smaller locules, firmness and thicker fruit into the tomato genome, breeders undoubtedly removed genes influencing taste. In the past, many leading tomato breeders were indifferent to this fact. Today, things are different. Many farmers, responding to consumer demand, are delving into the tomato’s preindustrial past to find the flavors of yesteryear.

Allen has a good word to say for the wild relatives:

The architect of the modern commercial tomato was Charles Rick, a University of California geneticist. In the early 1940s, Rick, studying the tomato’s 12 chromosomes, made it a model for plant genetics. He also reached back into the fruit’s past, making more than a dozen bioprospecting trips to Latin America to recover living wild relatives. There is scarcely a commercially produced tomato that didn’t benefit from Rick’s discoveries. The gene that makes such tomatoes easily fall off the vine, for instance, came from Solanum cheesmaniae, a species that Rick brought back from the Galapagos Islands. Resistances to worms, wilts and viruses were also found in Rick’s menagerie of wild tomatoes.

And he also plugs genebanks:

…we can take comfort in the tomato’s continuing, explosive diversity: the U.S. Department of Agriculture has a library of 5,000 seed varieties, and heirloom and hybrid seed producers promote thousands more varieties in their catalogs.

Not quite sure where he got that number, as the C.M. Rick Tomato Genetic Resources Center seems to have about 3,500 accessions, but anyway.

Ecologists breaking (unwritten) ecological laws

Andy Jarvis, our man with the global insights, sends this despatch:



ResearchBlogging.org


This article just came out in Science about assisted colonization. ((O. Hoegh-Guldberg, L. Hughes, S. McIntyre, D. B. Lindenmayer, C. Parmesan, H. P. Possingham, C. D. Thomas (2008). ECOLOGY: Assisted Colonization and Rapid Climate Change Science, 321 (5887), 345-346 DOI: 10.1126/science.1157897)) That is the fancy term for moving a population from one place to another. Over the past few years this concept has been gaining ground, especially with the barrage of horror stories about the impacts of climate change on the geographic range of species. The authors propose a decision framework to identify candidate species for translocation (or assisted colonisation as it seems to now be called). The decision framework consists of criteria for threat, feasibility, and cost-benefit. Amazingly, the whole concept of ecological risk is not taken into account in the decision framework. The authors mention it in the text, and sidestep the issue somewhat by saying that these are short distance translocations, but this may not always be the case. With the best of intentions, we’ve had some really great “assisted colonisation” events in the past that have caused ecological disaster. See Australia, Lake Victoria, the Southern US, etc. etc. The list is endless.

Before I go too far, I must step back and state the positive side of this concept. After all, the objective is conservation. Done properly, with sound risk analysis of direct and indirect impacts on ecological communities (and anthropogenic systems, like … errrr… agriculture), assisted colonisation could save species from near certain doom. An innocent way of seeing it is that you are just lending a hand to species who can’t quite migrate as fast as others. If migration rates are lower than the speed of climate change, or a pesky river gets in their way, then ecologists come to the rescue and move you. It’s like helping an old lady across the road.

Avoiding long-distance assisted colonisation is a useful surrogate for “eco-safety” (a new term is born), but I think it is dangerous as many assumptions are being made with that one. Suggested next article: Risk analysis framework for assisted colonisation. Readers get going.

As a side note, and while I am in the mood for inventing new terms, we also need to come up with a name for this kind of conservation. We have in situ, we have ex situ. What would be good for this kind of conservation? Non-situ could well be the case if you don’t assist colonisation, but I can’t think of a good name for populations that are assisted. Anyone fancy a place in the history books by giving this a name? ((I propose neo-situ. Ed.))

Nibbles: Maize, Climate change, Erosion (not), Bees squared, Cordyceps, Apples, City gardens