Category: Information

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Nibbles: Year of the Goat, Nutritional guidelines, Healthy diets, IK & conservation, Healthy orchards, Indian endemics trouble, CWR garden, NGS & food security, 3000 rice genomes at work, C4 rice, It’s economics stupid, US animal products map, Milk production history, Old Chinese cheese, Old Arabian seashells by the seashore, Gordon Bleu insects, African agriculture visions, Agroecology conference report, Smallholder diversity, Seed systems project, Supermarket farms, Toronto beer, Herbs factsheets, Ecosystems map, Contested Agronomy

Sorry about no blogging last week. Was watching sausages being made. Here’s a quick roundup of most of the stuff I would have Nibbled.

And on that note, that’s all folks. Because this was such a pain to put together after a week’s hiatus, I’m going to leave it on the front page for a day or two before sending it to the Siberia of the sidebar. Oh and BTW, people. We want to reach 6,000 followers on Twitter, preferably before that jetpack arrives, so follow us already, and tell your hipster friends.

Wait, too needy?

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Brainfood: Domesticating seaweed, Upland sheep, Using CWR, Breadfruit amino acids, Species modelling, Echinochloa review, Fermented foods, Buckwheat breeding, Biofortified millet, Weird Japanese chicken, Barley yield stability

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Livestock mapping comes of age

For your information, we have been beavering away since then, collecting more recent and detailed sub-national livestock statistics and disaggregating these using a slightly modified modelling approach, and 1 km multi-temporal, Fourier-processed MODIS imagery from the University of Oxford. We hope in time to produce global coverage for the most important livestock species, and make these publically available, but we have focussed our initial efforts on poultry and pigs in Asia.

ResearchBlogging.orgThat was Timothy Robinson in a comment on a post of ours back in 2012, and he’s been true to his word. There was a paper last year 1, and there’s a wiki for the data.

pigs

I suggested in my earlier post that it was possible to get the impression that a lot of different players were working in parallel, if not in actual competition, on livestock distribution mapping. If that was indeed the case, and perhaps it was just an impression, it all seems to have been resolved in the intervening couple of years, thank goodness. According to the wiki:

In a multi-partner collaboration centered on the International Livestock Research Institute (ILRI), the Food and Agriculture Organization of the United Nations (FAO) and the Université Libre de Bruxelles (ULB-LUBIES), global maps of livestock distributions and production systems are being revised and updated.

Only fair to add that I landed on this via a blogpost on Vox, of all places, which has been getting quite a lot of attention on Twitter, for some reason. It seems to have escaped my early warning system last year.

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New version of banana genebank information system goes live

Great to see a new version of the Musa Germplasm Information System (MGIS) released. The URL is unchanged. The key improvements are listed as follows (slightly edited):

1. All information on a single accession can be viewed in one page
2. Taxonomic content of each collection is summarized graphically.
3. Easier data filtering and export functions.
4. Users can share comments on any accession.
5. Accessions can be requested online via the Musa Online Requesting system (MORS) with a modified interface.

I particularly like the ability to comment, though you do have to register for that. The data cover 2,281 accessions from six genebanks around the world, 2 including 1,456 in the International Transit Centre (ITC) managed by Bioversity International in Belgium:

Screen Shot 2015-02-10 at 9.27.54 AM

The ITC data are also in Genesys, which shows 1,529 accessions rather than 1,456. I assume MGIS is the more up to date, but I’m unclear why there should be a difference. 3

You can search among the 2,281 accessions on name or number; or by filtering by any combination of genebank, species, subspecies, genome group (AAB, say), subgroup (Cavendish, say), country of origin, ploidy, whether there’s a photo, whether it’s been included in a molecular study, and availability. Searching is pretty fast.

Each accession gets a nice page summarizing all the pertinent information.

Screen Shot 2015-02-10 at 9.33.10 AM

That information can include morphological characterization data, and illustrations, as you can see above, but I could not find a way of searching the database based on a particular descriptor or combination of descriptors. You get a map when collecting locality is known, but you can’t map multiple accessions, as far as I could see. You’d have to do that in Genesys, I guess.

If you want to download data, you have to cut and paste accession numbers into a form on another page, and then you get a CSV or XLS. It didn’t look to me like you could export either morphological characterization data or molecular data. I have to say I was disappointed by the whole export thing.

So, some good things, some not so good things in this new version of MGIS. I’ll be keeping an eye on it for further developments. And continue playing with it, of course. Maybe I missed something.

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Nibbles: Avocado rising, Cynobiofuel, Ginseng in situ, MGIS, Strawberry breeding, Maca biopiracy, Certification