All maize, all the time

Lots on maize on the interwebs lately. First, there was a Nature Plants paper on the origin of the crop in the southwestern US, comparing DNA from ancient cobs with that from Mexican landraces:

“When considered together, the results suggest that the maize of the U.S. Southwest had a complex origin, first entering the U.S. via a highland route about 4,100 years ago and later via a lowland coastal route about 2,000 years ago,” said Jeffrey Ross-Ibarra, an associate professor in the Department of Plant Sciences.

A separate article in the journal summarized the results and set them in a wider context:

As genomic and palaeo-genomic studies have become more common, it has become increasingly clear that virtually every domestic plant and animal has incorporated genomes of numerous populations, including many that were not involved in the original domestication process. For example, although grapes, apples and pigs were domesticated outside of Europe, admixture with native wild European species has been so significant as to obscure the geographic origins of the modern domestic populations.

Meanwhile, the controversy over how to measure genetic erosion in maize continues, though I’m afraid in this case only the extract is free.

Which all means that the rather nice learning resource on maize domestication at the University of Utah, which I coincidentally recently came across, may need to be tweaked a bit.

Incidentally, if you plug Zea into the Native American Ethnobotany database at the University of Michigan, also a serendipitous find over the holidays, you’ll see that maize was far from being just a food plant.

There are even a couple of historical maize specimens included in the beta version of the new data portal of the Natural History Museum in London, which seems to be getting the softest of launches just now. Great to browse through. Not sure what kind of launch Brazil’s new(ish) biodiversity information system (SiBBs) got, but it too features maize records, over 400 in this case, though only 10 georeferenced. The source of most is given as “Dados repatriados – United States (no coordinates)”, which means that they came from GBIF, and in the case of maize are probably therefore mostly from GRIN. As I said a couple of posts ago for wheat, data sure does get around online.

One wheat database to rule them all

Interesting to see Brockwell Bake, of all people, come up with an online database which

…brings together publicily available data for around 398,000 wheat lines from many wheat germplasm collections including the European Wheat Database, the Vavilov Insitute (Russia), the Australian winter cereals collection, USDA/GRIN (USA), CIMMYT, ICARDA and the Nordic Gene Centre with additional collection site information from FIGS plus pedigree, synonym and genetic data from GRIS and gene symbol and class information from the Catalogue of Gene Symbols to create a central point to help you find wheat lines of interest to you.

In terms of coverage, that’s not far short of what Genesys has, which is 415,070 accessions. Online data does get around…

Cup of cocoa brimmeth over

The International Cocoa Quarantine Centre at the University of Reading has been doing its business of providing disease-free cacao germplasm very quietly and unobtrusively, though no less effectively for that, since it took over from Kew in 1985. Funny, therefore, to see it splashed all over the headlines at the turn of the year. For example, the BBC trumpeted: “Facility opens to safeguard the future of chocolate.” What happened, of course, is that the ICQC just moved into a new, £1 million home at the university:

It consolidates the collection of 400 varieties into a single, improved greenhouse and should make the quarantine process faster, cheaper and greener.

Interestingly, I can find nothing on where the money came from, not even in The Economist, which you would have thought would have looked into it. In any case, great that funds were found to invest in such an important facility in support of cacao research and development. Some think that it would have made better financial sense to have it in a non-cacao producing country a bit closer to where the action is, but there are arguments on both sides.

Anyway, since we’re talking Theobroma, let me take the opportunity of pointing you to the brand new Instagram account of the Cocoa Research Centre at the University of the West Indies in Trinidad, which is the source of much of the material at Reading. They’re also on Twitter.

Plan to visit the ICGT if you have not yet seen it. http://bit.ly/GenebankTour

A photo posted by Cocoa Research Centre (@cocoacentre) on

Simran Sethi has been there a lot lately, and also has some cool pix.