- Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens. Domestication was Lamarckian.
- Global economy interacts with climate change to jeopardize species conservation: the case of the greater flamingo in the Mediterranean and West Africa. Financial crisis leads to closing down of Mediterranean saltpans, which is not good news for flamingo. Climate change doesn’t help. Must be similar examples for plants, Shirley.
- Parallel Evolution Under Domestication and Phenotypic Differentiation of the Cultivated Subspecies of Cucurbita pepo (Cucurbitaceae). C. pepo subsp. pepo and subsp. texana underwent similar genotypic and phenotypic changes during domestication.
- Ecological and human impacts on stand density and distribution of tamarind (Tamarindus indica L.) in Senegal. Climate change will lead to an area of currently low density in the NW being a refugium. Connectivity problems will ensue.
- Biofortification of wheat through inoculation of plant growth promoting rhizobacteria and cyanobacteria. Breeders give up.
- Nutritional ranking of 30 Brazilian genotypes of cowpeas including determination of antioxidant capacity and vitamins. Breeders take heart.
- A short history of Lagenaria siceraria (bottle gourd) in the Roman provinces: morphotypes and archaeogenetics. Out of Asia. And more.
- Functional Properties, Nutritional Value, and Industrial Applications of Niger Oilseeds (Guizotia abyssinica Cass.). It has them, in spades, as this paper summarises.
- Sex at the origin: an Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually. The Himalayan foothills would seem to be the place where to look for resistance.
- Evolutionary History of Pearl Millet (Pennisetum glaucum [L.] R. Br.) and Selection on Flowering Genes since Its Domestication. Bayesian modelling of 20 random genes supports domestication about 4,800 years ago, with protracted introgression from the wild relative, and selection sweeps suggest flowering related genes unsurprisingly underwent strong selection as the crop spread southward. But a single domestication scenario? Anyway, sounds familiar, doesn’it.
- Genome-Wide Analysis of the World’s Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection. Much like, ahem, pearl millet. For flowering genes, read horniness genes. The bit about an initially broad sampling of diversity sounds a bit like the horse. Who out there is going to synthesize all this domestication stuff? Not that I’m looking for a meta-narrative, mind.
- Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA. Well, sequence the whole thing and be done with it is what I say, why flaff around with ultra-this and super-that?
- The crop yield gap between organic and conventional agriculture. 20%.
- Marcela, a promising medicinal and aromatic plant from Latin America: A review. Achyrocline satureioides, in the Asteraceae. Yeah, I never heard of it either. But these guys say it’ll make you rich and beautiful.
- Comparative genetic structure within single-origin pairs of rice (Oryza sativa L.) landraces from in situ and ex situ conservation programs in Yunnan of China using microsatellite markers. 2-5 times more unique alleles in the in situ version of various landraces compared to the ex situ version, collected in 1980. But same number of common alleles.
- Mutualism breakdown in breadfruit domestication. More recent cultivars have less abundant and less species-rich arbuscular mycorrhizas.
Nibbles: Microbial diversity, Blog, Yams, Benefits of diversity, Ancient ploughing, Oman’s genebank, Lodoicea, Wheat senescence, Maize landrace marketing, Setaria flowering, Prisoner yams, Eating weed
- Microbiologist makes Guardians of Microbial Diversity award. Agromicrobes awaited.
- Fabulous giant new superinteresting megablog scheduled to launch today.
NoRSS.Yet? - Who likes which yams (by which they mean Dioscorea) in Madagascar? Kew will have answers.
- Genetic diversity invades the zeitgeist, or something.
- Or would you prefer something a little more down to earth?
- Oldest ploughed fields in Czech lands.
- Crazy mixed up report on this weeks new genebank, in
OmanQatar. “Up to 10,000 genes”? Be still my beating heart. - Ich bin ein coco-de-mer-nut.
- Heat speeds up wheat aging. I know how it feels.
- A “Starbucks Of Tortillas”? Sounds worse than it is.
- Welcome news of fundamental work on a “minor” millet.
- IITA goes to jail.
- Genetically modifying cannabis to make it safe to eat. Such a bad idea. On so many levels.
Brainfood: Early farmers, Ecological restoration, IPRs, Soil bacterial diversity, Perenniality, Carrot diversity, Earthworm mapping
- Ancient DNA from an Early Neolithic Iberian population supports a pioneer colonization by first farmers. People, not just crops, moved.
- Genetic consequences of using seed mixtures in restoration: A case study of a wetland plant Lychnis flos-cuculi. After a few generations of use for seed production, it’s best to abandon ex situ stocks and go back to the wild populations.
- Creative Commons licenses and the non-commercial condition: Implications for the re-use of biodiversity information. It’s complicated. I wonder if the multi-headed hounds who guard the gates to GBDBH are aware of this. Here’s a blog post.
- Is diversification history of maize influencing selection of soil bacteria by roots? Kinda.
- A horizon scan of global conservation issues for 2012. Perennial cereals make the cut.
- How pristine are tropical forests? An ecological perspective on the pre-Columbian human footprint in Amazonia and implications for contemporary conservation. It doesn’t matter.
- Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci. Western and Asian groups, the latter more diverse, because of landraces. But 88 accessions does seem a bit few. And no wilds.
- Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. 28 species! But many gaps. No diversity map. Will send them DIVA-GIS for Christmas.
Getting to grips with hairy vetch
A post over at Biofortified entitled “Will cover crops feed the world?” asked an intriguing question:
Why not take a survey of red clover and hairy vetch germplasm, looking for those that fix nitrogen at high rates, have good winter survival, and decay at a reasonable rate to provide fertilizer for crops the following year, and then combine those traits? (And while you’re at it, you could try to do something about hairy vetch’s horrendous seed yield. Non-shattering trait, anyone?)
Well, I thought to myself, maybe you can find those traits already combined. So I looked on Genesys to see what germplasm of Vicia villosa, or hairy vetch, we have to play with. Quite a bit as it turns out: 1374 accessions from 60-odd countries, conserved in 30-odd genebanks. These are the accessions which have georeferences:
I looked in a little more detail at the USDA collection over at GRIN. As luck would have it, there are data on 40-odd accessions from a 2001 evaluation trial. Among the descriptors recorded are N content and winter survival. I downloaded the Excel spreadsheet, and some quick sorting revealed a couple of accessions which are both high in N and have decent winter survival, eg PI 232958 from Hungary and PI 220880 from Belgium. Another dataset shows that some accessions in the collection are non-shattering. Alas, neither of the previous two accessions were characterized for that trait, or at least I couldn’t find the data online, but I was intrigued to see that PI 220879, also from Belgium, is non-shattering.
I posted Biofortified’s question on Facebook too and Dirk Enneking came back almost immediately with more advice:
Provorov and Tikhonovich suggest that the recently domesticated species such as Vicia villosa are better at N-fix. For non-shattering, try the named cultivars such as Ostsaat etc. and grow them where there is sufficient humidity at harvest time to reduce shattering.
Now, where’s my finder’s fee?
Brainfood: Sorghum core diversity, Indian mango diversity, Montia potential, Assisted migration, Corchorus diversity, Soil DNA, Fire!, Coffee pest, Earthworms
Making life simpler for you, we have created an open Mendeley group for the papers we link to here. If you’re already using Mendeley, feel free to join the group (and use it to suggest papers we might miss). You can also discuss papers there, but frankly, we’d prefer you to do that here. Or on Facebook. Even if you don’t use Mendeley, you can subscribe to the RSS feed from the group and get stuff that way. Are we cool, or what?
- Variation in flowering time in sorghum core collection and mapping of QTLs controlling flowering time by association analysis. 4 QTLs and 7 loci detected under different conditions. Is that, like, a lot?
- Evaluation of genetic diversity among commercial cultivars, hybrids and local mango (Mangifera indica L.) genotypes of India using cumulative RAPD and ISSR markers. Just one big happy family.
- Montia fontana L. (Portulacaceae), an interesting wild vegetable traditionally consumed in the Iberian Peninsula. Aquatic herb has high fibre and lipids. High oxalate too though. Breeders enjoined to get to work. On Montia. Riiiiight.
- Taking stock of the assisted migration debate. It’s REALLY complicated. Scientists are not that great at explaining it. More work needed all round. But now we have fancy diagrams.
- Genetic diversity and relationships in Corchorus olitorius (Malvaceae s.l.) inferred from molecular and morphological data. Out of Africa. Ethiopia, to be exact.
- Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity. Wonder whether it works with agricultural ‘dirt.’
- The human dimension of fire regimes on Earth. Entertaining gallop through the history of the use of fire to manage landscapes around the world and down the ages. Need to catch my breath here.
- Some like it hot: The influence and implications of climate change on coffee berry borer (Hypothenemus hampei) and coffee production in East Africa. That title just had to come sometime, didn’t it.
- A critique of earthworm molecular phylogenetics. So apparently “molecular phylogenetics is now on the verge of revolutionizing earthworm systematics.” Beyond satire.