Water buffalo diversity

Michael Kubisch is a geneticist and reproductive physiologist working at the Tulane National Primate Research Center in the New Orleans area. He’s sent us his take on a recent paper on the genetics of the water buffalo. We really welcome this kind of contribution from our readers. Keep ’em coming! Here’s what Michael has to say:

Results of an interesting study by Chinese researchers have just been published, describing an extensive analysis of the genetics of Chinese swamp water buffalo (Bubalus bubalis). The Chinese swamp-type buffalo differs from the Indian river-type buffalo by the fact that it has 48 chromosomes compared to the 50 found in the latter. There is a third subspecies, the wild water buffalo, which may still exist in Southeast Asia, although its population size and genetic status are unknown and the animal is listed on the IUCN red list as being threatened. Based on analysis of mitochondrial DNA (which is solely inherited from one’s mother and consequently ideal for tracing maternal inheritance patterns), it appears that river and swamp buffalo split about 28,000 years ago with a further split in the swamp buffalo into two maternal lines taking place about 18,000 years ago. The genetic diversity varies between the two swamp buffalo matrilines in China and the authors suggest that the difference between the two lines might in part be due to the fact that occasional genetic introgression from wild swamp buffalo might have taken place into one of the lines. Interestingly, domestication of water buffalo seems to have occurred independently in India and China, most likely as a result of rice cultivation. Substantial numbers of water buffalo outside exist Asia, among other countries in Italy, where, as any cheese afficionado will know, their milk is used for the production of mozzarella.

White grapes are mutants

Thought that would get your attention. Actually, what the research summarized here revealed was that a couple of genes mutated independently thousands of years ago in the ancestor of the modern grapevine, whose berries were red. The resulting white variety proved to be the ancestor of almost all of the 3000 or so white grape varieties we have today. This discovery from CSIRO will apparently be useful in marker-assisted breeding.

More on CWRs

I’ve gone back to my blog a few days back on crop wild relatives and expanded it somewhat. In particular, I’ve added links to several more recent papers on the subject. Should have probably done that in the first place. Sorry.

Starch grains and the origins of agriculture

A couple of papers discussed here and here (among other places: the chili pepper story in particular has been getting a lot of media coverage) describe how the minute, species-characteristic starch grains found in micro-crevices on stone tools and cooking utensils recovered from archaelogical sites are being used to study the domestication of crops as varied as maize, cassava and chilies in the Americas. The findings are pushing back the timing of domestication and suggesting that wet lowland areas were more important in the process than previously thought. Jeremy blogs on the chili angle at greater length here. No word on the past of cactus cultivation, at least in these papers, but this piece suggests its future may be troubled.

Crop wild relatives underused

Are crop wild relatives (CWR) more trouble than they’re worth? There are certainly significant challenges involved in including them in breeding programmes, but you’d have thought that between the new molecular tools that are now out there, the greater numbers of CWR accessions in genebanks, and all the information about how useful CWRs can be, breeders would be falling over themselves to make those kinky inter-specific crosses. Well, according to a major review by our friends at Bioversity International (the outfit formerly known as the International Plant Genetic Resources Institute), the use of CWRs in breeding programmes has been steadily increasing in the past 20 years, but probably not as much as might have been expected. There’s been a number of papers recently on CWRs. This paper, also from Bioversity, looks at in situ conservation of CWR. Check out this for a discussion on the definition of the term, and, from some of the same people, there’s this overview of conservation and use of CWR, using a specific example. Here’s an example of conservation assessment and priority-setting for the wild relatives of the peanut. For a discussion of the possible effects of climate change on these species, see this.