Spatial data everywhere
Looks like mapping is in the air. Hardly had I finished messing around with European trees maps that I ran across this random dump of Brazilian crop distribution data. The source is given as the Brazilian Institute of Geography and Statistics (IBGE), but I was not able to find the original maps there. I still wanted to do a mashup with Genesys, though, of course, which meant a little more messing around.
In the end, it turned out to be fairly easy, though not as easy as with those EUFGIS shapefiles. You have to hack the map off that first website as a screenshot, then add the JPG as an image layer in Google Earth and tweak the corners until it more or less fits on top of the borders of Brazil, which is the bit that takes time. Once you’re happy with the fit, you can download an appropriate KML file from Genesys and plonk it on top. Here’s the result for cassava (click on the image to see it better).
The green splodges mean cassava cultivation according to IBGE, and the red dots are cassava landrace accessions from Genesys. That would be a pretty good way to identify gross geographic gaps in ex situ holdings, but for the fact that, crucially, there’s no data from the national collection at Cenargen in Genesys. Yet. We’re working on it. Stay tuned.
Brainfood: Marginal breeds, Biodiversity vs C, Cassava bread, Biodiversity & function, High throughput genomics, Speed breeding, Spiderplant breeding, Agronomy & breeding, Accessibility, PA threats, Diversification, Self-medicating apes, Rusty wheat
- Signatures of positive selection in African Butana and Kenana dairy zebu cattle. Cattle breeds from marginal environments show signs of selection in genome regions associated with adaptation to marginal environments.
- The extent and predictability of the biodiversity–carbon correlation. Co-benefits in about 20% of tropical regions.
- Consistent effects of biodiversity loss on multifunctionality across contrasting ecosystems. Losing biodiversity has different effects on individual functions across ecosystems, but consistent effects on the overall impact on functionality. If you see what I mean.
- Cassava bread in Nigeria: the potential of ‘orphan crop’ innovation for building more resilient food systems. The end of the value chain is the important bit.
- Scaling up: A guide to high throughput genomic approaches for biodiversity analysis. Will probably need to be revised next year.
- Speed breeding is a powerful tool to accelerate crop research and breeding. Shuttle breeding on steroids.
- A roadmap for breeding orphan leafy vegetable species: a case study of Gynandropsis gynandra (Cleomaceae). Could do with some high-throughput speed breeding focused on the end of the value chain. How’s that for a coincidence (see 3 entries above)?
- Impact of Crop Diversification on Rural Poverty in Nepal. Growing high-value vegetables can help. Is Cleome high enough value, I wonder, not for the first time?
- Planning for food security in a changing climate. Actually it starts with envisioning new crop management systems, then comes breeding (see entry above).
- A global map of travel time to cities to assess inequalities in accessibility in 2015. Over 10 years in the making, I’m told. Let the mashups begin.
- An assessment of threats to terrestrial protected areas. Number of threats increases with accessibility. Somebody mention mashups?
- Self-medication by orang-utans (Pongo pygmaeus) using bioactive properties of Dracaena cantleyi. External application as anti-inflammatory done by both orangutans and local indigenous human populations.
- Yield effects of rust-resistant wheat varieties in Ethiopia. Improved resistant varieties are better, except under abiotic stress, which is why farmers are going back to traditional varieties. But are they comparing apples and oranges (as it were)?
Brainfood: Coffee apocalypse, Barley journey, Haplotype cores, Pollinator conservation, Rooting for tubers, Aussie CWR, European veggies, Capsicum evolution, Wheat genome
- Climate change adaptation of coffee production in space and time. There’s a plan, at least for Nicaragua.
- Journey to the east: Diverse routes and variable flowering times for wheat and barley en route to prehistoric China. Growing in diverse environments pre-adapted barley for its shift to spring sowing and move eastwards to China.
- Capturing haplotypes in germplasm core collections using bioinformatics. Fortunately, “the number of accessions necessary to capture a given percentage of the haplotypic diversity present in the entire collection can be estimated.”
- Pollinator Diversity: Distribution, Ecological Function, and Conservation. 350,000 species!
- Roots, Tubers and Bananas: Planning and research for climate resilience. Much the same, but faster.
- Priorities for enhancing the ex situ conservation and use of Australian crop wild relatives. Go north, young woman.
- Consequences of climate change for conserving leafy vegetable CWR in Europe. Go, err, northwest.
- Phylogenetic relationships, diversification and expansion of chili peppers (Capsicum, Solanaceae). Monophyletic clade which originated along the Andes of W to NW South America and spread clockwise around the Amazon.
- The Aegilops tauschii genome reveals multiple impacts of transposons. The D genome bites the dust.
Nibbles: Joanne Labate, Gebisa Ejeta, David Spooner, Strawberry 101, Mad honey, First figs, Agrobiodiversity maps, School project, Takesgiving, Private investment
- USDA vegetable crop curator tells it like it is.
- $5 million to find more Striga resistance genes in sorghum.
- Wild potato herbarium specimens find good home.
- How two New World strawberries got together in the Old World and then spread all over the world.
- Hallucinogenic honey: what could possibly go wrong?
- First farmers gave a fig.
- The other of all agrobiodiversity map mashups.
- Cool school project on crop diversity in Europe.
- In other news, “Columbusing” is a thing.
- Private sector investment in conservation: Turning “small and new” into “big and familiar.”