- Probably way more than you ever need to know about FIGS. In one handy PowerPoint.
- The British love affair with the apple comes to a head. And goes over the top.
- 100 years of the Paddy Breeding Station. No, nothing to do with the Irish.
- Another damn app competition.
- Geographical Indications in Brazilian law deconstructed.
- Not too late for a cappuccino. But make mine a civet cat shit one.
- More rewriting of Amazon pre-history.
- Marianne North, botanical artist, in the Amazon and elsewhere, remembered.
- Starting now FAO Symposium: applying information on food and nutrition security to better decision making. There’s even a hashtag — #isfsi2012 — but nobody seems to be using it.
Brainfood: Cassava in Colombia, Tubers in Peru, Breadfruit diversity, Hominins and elephants, Evolution, Domestication, Mongolian sheep, Roads, Econutrition, South Asia food composition
- Informal “Seed” Systems and the Management of Gene Flow in Traditional Agroecosystems: The Case of Cassava in Cauca, Colombia. Farmers move cassava around a lot.
- Ecological and socio-cultural factors influencing in situ conservation of crop diversity by traditional Andean households in Peru. Farmers should be supported in moving tubers around more.
- Nutritional and morphological diversity of breadfruit (Artocarpus, Moraceae): Identification of elite cultivars for food security. There’s a lot of it.
- Man the Fat Hunter: The Demise of Homo erectus and the Emergence of a New Hominin Lineage in the Middle Pleistocene (ca. 400 kyr) Levant. Disappearance of elephant led to replacement of Homo erectus. Quite a difference from the more recent hominin-elephant dynamic.
- Fitness consequences of plants growing with siblings: reconciling kin selection, niche partitioning and competitive ability. All agriculture is about reconciling kin selection.
- Cultivation and domestication had multiple origins: arguments against the core area hypothesis for the origins of agriculture in the Near East. Revisionism rules.
- Tracing genetic differentiation of Chinese Mongolian sheep using microsatellites. Five populations clustered by fancy science into, ahem, five populations.
- Road connectivity, population, and crop production in Sub-Saharan Africa. Fancy science reveals better roads would be good for agriculture. Hell, my mother-in-law could have told them that.
- Econutrition: Preventing Malnutrition with Agrodiversity Interventions. Home gardening is the way to go.
- Carotenoid and retinol composition of South Asian foods commonly consumed in the UK. Palak paneer is not just good, it’s good for you.
Mining the minerals in cowpea
In the wake of recent news of successes in biofortifying root and tuber crops like sweet potato and cassava, it is as well to remind ourselves that grains also provide micronutrients, ((Having written that, of course another reminder immediately appeared.)) and a paper in Plant Genetic Resources: Characterization and Utilization does a good job of just that for the somewhat neglected cowpea. ((Boukar, O., Massawe, F., Muranaka, S., Franco, J., Maziya-Dixon, B., Singh, B., & Fatokun, C. (2011). Evaluation of cowpea germplasm lines for protein and mineral concentrations in grains Plant Genetic Resources, 9 (04), 515-522 DOI: 10.1017/S1479262111000815))
The authors assessed 1541 accessions from the IITA genebank for the crude protein, Fe, Zn, Ca, Mg, K and P content of the grains. They found fairly wide diversity, but recognized some 9 groups of accessions within which the nutrient profiles were relatively similar. The “best” 50 accessions belonged to only three of these groups, and seven of the best 10 accessions to just one group. While admitting that “increased mineral content in the grains does not guarantee increased nutrient status for the consumer,” they concluded that
…members of some groups such as G5 and G9, which included TVu-2723, TVu-3638 and TVu-2508, would be potential sources of genes for enhancing protein and mineral concentrations in improved cowpea varieties. These lines would therefore be selected and used in crossing for generating segregating populations from where selections can be made for newly developed nutrient-dense cowpea varieties.
It may be the subject of another paper, but what Ousmane Boukar and his co-authors do not do in this one is investigate whether groups G5 and G9, which as I say are based on mineral composition, also hang together morphologically or geographically. Here’s the geographical distribution of the IITA collection, based on data in Genesys (you’ll see it better if you click on it):
The top 10 accessions in fact come from Benin, India (2), Mali, Nigeria, Puerto Rico, the US (3) and Zaire, so the latter is probably unlikely. Unfortunately, only the Mali and Benin accessions are georeferenced, but look at the nighbourhood of one of them, TVu-8810 from Benin, shown here in red:
Worth collecting a bit more around the village of Borgou?
Taking Climate Analogues for a drive around the block
I’ve been holding off taking a proper test drive of CCAFS’s new dream machine, Climate Analogues, despite all the media attention, because I heard that the boys and girls in the pits at CIAT were still tightening the cylinder head bolts and optimizing the valve timing. But now it seems they’re done fiddling, at least for now, and I’m going to take it out for a spin.
It’s a simple idea. If you want to help a farming community adapt to climate change, you need to have some idea of what their climate is going to look like down the line. In terms of agrobiodiversity, for example, it would be nice to know of places which right now have a climate like your site will have in 2030, or whatever date, because that’s where you’d look for crop varieties with the climatic adaptations they’re going to need. That is the guts of Climate Analogues. You can of course fiddle with emission scenarios, climate models, length of growing season, whether to deal with temperature and/or rainfall, and dissimilarity thresholds (how dissimilar do two places have to be to really matter?), and the manual takes you through all those options in detail, but what it basically does is compare the climate of a reference site, now and in the future, to the climate of all other places on earth, now and in the future. ((Well, ok, it doesn’t do the future-to-future comparison, but you get the picture.))
Easy enough to say, and extremely worthy, but clearly technically complex. That hasn’t stopped these guys before, though. Alas, the implementation in this case is not perhaps as elegant as one has come to expect. It’s still in beta, of course, so things are hopefully going to improve, but I’m sorry to have to report that I did not have an altogether smooth user experience.
Let’s get the little things out of the way first. Like if you don’t know that the default base map is called “Streets” it is a somewhat annoying process to get back to it. Like if you produce a pdf of your results you can’t then get back to your interactive map where you left it, unless you remember to open the said pdf in a separate tab. Like in the results pdf the legend of the map is totally different to the one you’ve just struggled to get to grips with in the online version. Like the fact that in that online map legend red means high dissimilarity, where really what I for one would want to highlight is low dissimilarity, or high similarity, between sites. Like the fact that the place where you change probably the most crucial thing, unless you’re a total climate geek, which is the direction of comparison (now with now, or future with now, or now with future), is buried in a menu called “Additional parameters.” Like the fact that it’s not entirely clear what future year we’re talking about anyway.
Forget all that, I’m probably just a pernickety user who hasn’t read the manual attentively enough and these smallish details will anyway be dealt with in time, no doubt. What I can’t really excuse is that you’re not really enabled to directly use the maps you get, to do anything else with them once you get them. Not unless you download the results and import them into your GIS and fiddle with them there. This seems to me CGIAR GIS geeks producing a tool for other GIS geeks. The blurb talks about facilitating farmer-to-farmer exchange of information. As things stand, the only way that’s going to happen is if there’s a person with a GIS mediating the exchange. Good for GIS people, not so good for your average researcher or policy maker. Whether good or bad for the farmer is moot, I would say.
Let me give you an example. Here’s a screen grab (because that’s the only way I could think of to export a bit of the map) of the results, using all the defaults for simplicity, for the now-to-now comparison of the climate of my mother-in-law’s farm in the Limuru highlands (X=36.679110, Y=-1.077666).
Let’s say we want to give my mother-in-law beans adapted to her current climate. Remember that what we’re looking for is high similarity, which means low dissimilarity, which means green, according to this legend (as I said, it’s a different legend in the “Results” tab). Phew. Anyway, we should look for the beans in Ethiopia, shouldn’t we. Result! Then we say to grandma, well you also need to look ahead, so here’s a map of places which right now look like your place will look like in 2030. You need beans from there too, madam.
Aha! Grandma needs beans from a bit further north in Kenya and the Great Lakes region as well as some bits of Ethiopia. ((Interesting. Grandma will become more internationally interdependent for bean genetic resources. Must make sure to tell her that.)) Yes, but wouldn’t it be nice at this stage to import a dataset of bean accessions worldwide and see if any of them come from green squares in either map? Can’t do it here, that I can see. Need to call the guy with the GIS, I suppose. Or wouldn’t it be nice to print out a nice map of Kenya that grandma can use to drive to the green squares and find bean farmers and swap some germplasm? Can’t do it here, that I can see. Need to call that GIS guy again, it seems. ((Sidebar for the developers: When I ran the “forward” analysis, I got exactly the same map as with “backward”. No, really. I checked.))
So, in summary, a great idea, a significant technical achievement, and a potentially really useful tool for climate change adaptation. But it seems to me that if the greasemonkeys at CIAT really want this baby driven around at full speed by people other than other mechanics, they need to get back under the hood and do a thorough tune-up. Or tell me I’m wrong. I’d love to hear from you. Seriously. This is important.
Nibbles: Brand new tool, Baseline, Orange cassava, Food non-crisis, ILRI on the frontline, WorldFish
In recognition of the fact that I’ve spent the past week at CIMMYT up to my ears in the CGIAR, an all-CGIAR edition!
- CCAFS unleashes hell. Well, Climate Analogues anyway. No, wait…
- How does CCAFS measure impact anayway? Well, by documenting progress in adaptation relative to a baseline, of course. What I want to know is how the baseline captures within-crop diversity.
- Meanwhile, HarvestPlus is having another impact of its own. Well, I guess we’ll really have to wait for the health studies to be sure, but anyway.
- And speaking of impact, IFPRI now says that surveys show that the food crisis was not really a crisis for the poor, where simulations say it was. Now what?
- ILRI remembers the visit of Angela Merkel, and, probably unrelatedly, discovers the joys of fermentation.
- WorldFish got a brand new website. Does Climate Analogues work for fish?