Re-inventing the genebank. Not.

ResearchBlogging.orgJeffrey Walck and Kingsley Dixon ((Who are respectively at the Department of Biology, Middle Tennessee State University, Murfreesboro, Tennessee and at the School of Plant Biology, University of Western Australia, West Perth.)) have a piece on genebanks in December’s Nature entitled “Time to future-proof plants in storage.” ((Walck, J., & Dixon, K. (2009). Time to future-proof plants in storage Nature, 462 (7274), 721-721 DOI: 10.1038/462721a)) It says some important things, but in a way that suggests that nobody has thought of them before, or has done anything about it, which I think needs to be countered. ((I wont say anything here about the lumping together of the Millennium Seed Bank at Kew and the Svalbard Global Seed Vault, which is just plain silly.)) The article is behind a paywall, alas.

Here’s the crux of Walck and Dixon’s beef.

At low temperatures, seeds can remain viable for hundreds if not thousands of years. Herein lies the problem: such seeds are literally frozen in time, a snapshot of the genetic diversity of a species at a particular point. Attempts to revive a seed in future habitats very different from those in which it developed could be doomed to failure. A germinating seed is genetically programmed to respond to a precise interplay of temperature and moisture that determines the climatic conditions in which it can best develop. In an environment that lacks the right temperature and moisture balance — which is likely to be disrupted by climate change — a seed will either fail to germinate or the seedling will perish soon afterwards (see Fig. 1).

What are their suggestions for getting around this problem? Here’s a summary:

    1. Harvest as much genetic diversity as possible, including at the edge of species ranges, and at different points in time. And harvest large quantities of seed whenever possible.
    2. Screen the plants for their adaptation to different environments. “For instance, subjecting seedlings to increased temperatures could allow the selection of those with higher heat tolerance.”
    3. Use climate models to identify areas where different populations will be best adapted. “…climate change will alter the home range of a species, so restorers can be sure to reintroduce seeds in places that will match their particular germination requirements.”
    4. “Policy-makers must get involved too: a comprehensive international agreement is required to coordinate the collection of genetic material, particularly for cross-border wild species.”

So, that would be collect properly, evaluate, match seeds to environments and put in place an international policy infrastructure. Doh! I really can’t see anything in that list that genebanks are not already trying to do. Can you? Maybe they’re not doing it as well as they might, and certainly the policy environment is still not ideal, but there’s surely nothing particularly new about these recommendations. Sure, it is always useful to remind a community about best practices, but it would have been nice to point out that genebank managers around the world know what these are, and are in fact trying to follow them.

If they had wanted to suggest something that isn’t already in place, why didn’t they mention the pressing need for a comprehensive global information system? Now that would be an improvement. And yes, we — and they — are working on it.

Nibbles: Indian buffalo, Indian local crops, CBD, AgricultureBridge, Kew, Geo-referencing, Cyprus, China and climate change, CC icons, Chinese AnGR, FAO information, Rose symbolism, Pacific ethnobotany, Grape history and genetics, Taraxacum

Hold on to your hats, this will make up for lost time. Hope you all had a nice break, Happy New Year!

Hi-tech helps crop wild relatives

Mr Peanut.png Our friend Andy Jarvis has been explaining to the readers of ICT Update not only how important crop wild relatives are, but also how geographic information systems can help conserve and make use of these important genetic resources. In the context of a longer article on Eco-efficient agriculture, Andy uses the peanut to point out that:

There are, for example, a total of 69 species of crop wild relatives that are in some way related to the cultivated peanut. Of these, 17 species are under significant threat of extinction from the expansion of the agriculture in Brazil, Paraguay, Argentina and Bolivia. Our analyses have demonstrated that a further 15 species are significantly threatened with extinction from climate change.

Jarvis and his team at CIAT use GIS and data from existing specimens to predict where important species might be found.

Collectors can then use global positioning systems (GPS), loaded with the data, to locate the vulnerable species and collect their seed.

Will that be enough to preserve the crop wild relatives on which the future of agriculture depends? Who knows. But it is a start.

P.S. In the same issue, Kwesi Atta-Krah, Deputy Direcctor General of Bioversity International, answers some questions about biodiversity, “the richest natural resource“.

Prize for GIS study of malnutrition and agrobiodiversity

Emmanuel Zapata Caldas, a geography student at the Universidad del Valle in Colombia, has won second prize at the XVIII National Geography Event for his work, carried out in collaboration with CIAT, on the spatial analysis of malnutrition in Latin America. Reproduced below are some of his results for Colombia, which he kindly made available to us (click to enlarge).

emmanuel

For this particular analysis, Emmanuel looked at the prevalence of anemia and used secondary data on poverty and agricultural production to identify sites in Colombia where the biofortification of different crops could have a significant impact on this aspect of malnutrition. Congratulations to Emmanuel for his prize, and his interesting work.