- Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved. Better than accession numbers? Well, yeah, but will it matter?
- FIELDimageR: An R package to analyze orthomosaic images from agricultural field trials. Extract plot-level results from your drone shots, automagically.
- Radiation Interception, Conversion and Partitioning Efficiency in Potato Landraces: How Far Are We from the Optimum? Quite far, but perhaps more interestingly you can predict tuber yield from time-series aerial imagery. Which means the above could come in useful.
- Genetic architecture and gene mapping of cyanide in cassava (Manihot esculenta Crantz.). High cyanide alleles in 2 major genes mainly found along Amazonian rivers and in coastal areas of Brazil. Drones unavailable for comment.
- Relationships among American popcorn and their links with landraces conserved in a microcenter of diversity. Did the diverse popcorns of southern Brazil derive from local diversification or independent local domestication? More work needed. Anyone going to mash this up with the cassava result above?
- Payments for agrobiodiversity conservation services: An overview of Latin American experiences, lessons learned and upscaling challenges. 5 ha of each of 100 varieties will cost you US$70,000 p.a. at a 5% discount rate. Bargain.
- Diversity Under Threat: Connecting Genetic Diversity and Threat Mapping to Set Conservation Priorities for Juglans regia L. Populations in Central Asia. Ex situ where threat level from climate change is severe, in situ where threat level due to climate change is minor, assisted natural regeneration where threat level from climate change is minor but severe from other things, like overgrazing. No word on payments for ecosystem services rendered.
- Composite modeling of leaf shape across shoots discriminates Vitis species better than individual leaves. Fancy maths used to composite leaf shapes along a shoot as a way of telling species apart.
- Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea (Cajanus cajan L.). From 10 genes and about 300 genotypes to 17 accessions with 4 superior haplotypes.
- Create Space for Indigenous Leadership to Preserve Agricultural Biodiversity. In the Ecuadorian Amazon, cacao production for cash is not driving down agrobiodiversity.
- Conceptual Links between Landscape Diversity and Diet Diversity: A Roadmap for Transdisciplinary Research. There are 4 different pathways whereby diverse forested landscapes can lead to diet diversity.
- ‘Keeping seeds in our hands’: the rise of seed activism. While the formal sector is still arguing about farmers’ rights, activists have moved the paradigm to seed sovereignty.
- Thirty-year monitoring and statistical analysis of 50 species’ germinability in genebank medium-term storage suggest specific characteristics in seed longevity. Huge dataset reveals some geographic variation in seed longevity within crops, among other things.
Exploring Afghanistan’s wheat
There’s a new paper on the geographic distribution of wheat cultivation in Afghanistan. You can explore the data online. But here’s the bottom line, the paper’s Fig. 9.
I downloaded the cultivated wheat data from Genesys and imported everything into QGIS to play around with. That’s almost 5,000 genebank accessions, about half of which are geo-referenced. Here’s the result.
Circles are all cultivated wheats, red dots everything that is not bread wheat. Note the irrigated areas (dark blue) are more likely to have modern varieties, and that the area of rainfed cultivation (bright green) varies considerably from year to year with precipitation. Probably some more collecting to be done then, in particular in the rainfed northwestern region, based on this map. But I’m not going to bet on that until I see whereVIR’s 570-odd Afghan wheats were collected.
Brainfood: Cover crops, Forest management, Mixtures, Diverse landscapes, Ethiopia and CC, Mapping settlements, Fonio, Peach, Aging seeds, African diversity, Svalbard, Vegetables
- The hidden land use cost of upscaling cover crops. You’d need to devote 4% of the arable maize area of the US to cover crop seed production to have enough cover crop seed for the maize cultivated area. That’s a lot. The answer: better cover crop genetics and agronomy.
- The first rapid forest inventory and resource use assessment of Dashtijum Nature Reserve, Tajikistan: a mixed methods approach. Fancy maths says you need to restrict grazing in these fancy walnut-fruit forests to prevent further degradation.
- Towards intercrop ideotypes: non-random trait assembly can promote overyielding and stability of species proportion in simulated legume-based mixtures. In silico modelling shows that not all mixtures outyield pure stands, but it’s hard to predict which will.
- Fixing our global agricultural system to prevent the next COVID-19. Beyond the land sparing vs sharing dichotomy, to multifunctional landscapes, supported by policies and markets.
- The role of climate in the trend and variability of Ethiopia’s cereal crop yields. Higher temperatures during 1979–2014 correlated with lower yields in much of the high potential area. So, trouble ahead.
- Precise mapping, spatial structure and classification of all the human settlements on Earth. Because they’re there, that’s why.
- Genetic Resources and Varietal Environment of Grown Fonio Millets in West Africa: Challenges and Perspectives. Lots of work to be done by enterprising breeders.
- Genetic Resources, Breeding Programs in China, and Gene Mining of Peach: A Review. Lots of work has been done by enterprising breeders.
- Patterns of mitochondrial DNA fragmentation in bread wheat (Triticum aestivum L.) seeds under ex situ genebank storage and artificial aging. Possible biomarker for seed viability, but differences between natural and artificial aging.
- Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa. Present day hunter-gatherers represent a contraction of a previously widespread human population, which interacted in complex ways with subsequent waves of pastoralists and farmers.
- The past shall not begin: Frozen seeds, extended presents and the politics of reversibility. So Svalbard apparently represents the politics of reversibility made concrete. Literally.
- The Role of Vegetable Genetic Resources in Nutrition Security and Vegetable Breeding. How about reversing the slide of traditional vegetables, eh? Those enterprising breeders needed again.
Nibbles: Mexico CC, Europe CC, Andean CC, CSA, Seeds, GIAHS, China genebank, Maize domestication, Coffee history, Conservation book
- Interactive website on bioclimatic corridors in Mexico. Bits don’t work, though.
- Interactive website on climate analogues for Europe.
- How Andean farmers are coping with the kind of changes mapped above.
- Oh dear, climate smart agriculture is a myth anyway.
- But saving seeds isn’t, thankfully.
- Still not enough linkage with the GIAHS, though, but maybe this course will fix that.
- Maybe start with peafowl? China shows us how.
- How maize became a staple: quite early, and quite quickly, basically.
- Not much coffee in early English coffeehouses. Amsterdam’s coffeeshops unavailable for comment.
- Open-access magnum opus: Conservation Research, Policy and Practice.
Brainfood: Stress, Peasants’ rights, Maize domestication, Plant diversity, Teff evaluation, Red clover diversity, WTP, AnGR cryo, Sheep history, Population & biodiversity, Planet proofing, Cassava map
- Rapid detection of stressed agricultural environments in Africa under climatic change 2000–2050 using agricultural resource indices and a hotspot mapping approach. Even some coldspots will turn hot.
- The UN Declaration on Peasants’ Rights (UNDROP): Is Article 19 on seed rights adequately balancing intellectual property rights and the right to food? What do you think?
- The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication. Domestication worked on lots and lots of really small-effect QTLs.
- Areas of plant diversity — What do we know? Quite a lot, actually.
- Current and projected eco-geographic adaptation and phenotypic diversity of Ethiopian teff (Eragrostis teff) across its cultivation range. Genebank collection thoroughly evaluated. Genebank unavailable for comment.
- Population structure and genetic diversity in red clover (Trifolium pratense L.) germplasm. Genotyping shows 4 geographic groups, with some linked phenotypic differences.
- ‘Warehouse’ or research centre? Analyzing public preferences for conservation, pre-breeding and characterization activities at the Czech genebank. Research centre, but only up to a point.
- Pollen Cryopreservation for Plant Breeding and Genetic Resources Conservation. Gotta wonder what the public preference for conserving pollen might be.
- The recent state of cryopreservation techniques for ex-situ gene conservation and breeding purposes in small ruminants: A review. Oocytes and embryos need more work than pollen.
- Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication. Domestication bottleneck, followed by diversity increase due to admixture. Too late to cryo, alas.
- A systematic review of biodiversity and demographic change: A misinterpreted relationship? High human population numbers are usually bad for biodiversity, but not everywhere and not always.
- A re-boot of tropical agriculture benefits food production, rural economies, health, social justice and the environment. Plant cool species on degraded farmland. Especially where human population density is high?
- CassavaMap, a fine-resolution disaggregation of cassava production and harvested area in Africa in 2014. Always good to have the next crop production map.